End-to-End Bioinformatics Solution for Next-Generation Sequencing

VarSome Clinical is a CE IVD-certified and HIPAA-compliant platform allowing fast and accurate variant discovery, annotation, and interpretation of NGS data for whole genomes, exomes, and gene panels. VarSome Clinical helps molecular geneticists and clinicians increase the diagnostic yield and support treatment decisions for genetic conditions.

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How does VarSome Clinical work?

Upload FASTQ or VCF

VarSome Clinical accepts FASTQ and VCF files. You can upload the data easily and securely through its web interface or you can harness VarSome's powerful API for an automated and secure data transfer. Once the files are uploaded, you can start the analysis!

Annotation & Classification

VarSome Clinical's robust pipeline is capable of analyzing gene panels, exomes, and whole genomes for individual samples, trios, families, and cohorts in just minutes. VarSome Clinical leverages the massive cross-referenced knowledge base of the free VarSome.com platform, and also offers access to licensed databases.

Intuitive Web Portal

VarSome Clinical's feature-rich and intuitive web interface allows for variant filtering according to pathogenicity, ACMG and AMP classification, allele frequency, gene list or phenotype, and many more. Dynamic and algorithmic filters allow you to perform simple or advanced filtering like segregation analysis, identification of de novo variants or variants in imprinted genes.


Clinical Report Generation

Once you have narrowed down the list of variants of interest, you can proceed with clinical report generation, which includes all the details of your variants, including literature references and your custom comments. The layout of the report is fully customizable according to your unique logos and branding policy.



VarSome Clinical is certified as an In-vitro Diagnostic Medical Device according to the requirements of EC 98/79/EEC.


ISO 13485

We are certified as a company with ISO 13485 for quality management system for medical devices.

Variant Knowledge Base

Cross-referenced data from 70+ genomic databases plus contributions from a 300'000-strong community.

HIPAA Compliant

VarSome Clinical is compliant with HIPAA and HITECH Act, ensuring that we have the required safeguards in place to protect ePHI.


End-to-End Solution

VarSome Clinical provides validated and clinically certified genome-scale variant discovery, annotation and classification.


Programming Interface

VarSome Clinical comes with powerful API for automated data transfer in both directions.

Did you know?

  • Variant Discovery

    VarSome Clinical's variant discovery pipelines have been designed to achieve high quality standards, such as reproducibility, sensitivity and precision:

    • Sensitivity: 99.8% for SNVs and 99.5% for indels
    • Precision: 99.8% for SNVs and indels
  • Precision Contests

    VarSome Clinical's variant discovery rocks! It received top marks in the recent contest organized by the Food and Drug Administration, and it was steadily in the top ranks in all metrics, as in previous precision FDA contests. These results are a testament to the VarSome team's total commitment to excellence. Check out our blog for more details.

  • Experts in Big Data

    To date VarSome has aggregated and cross-referenced 100+ leading databases and other data resources, representing over 33 billion data points, and new ones are added constantly over time. But there is more to it - whenever a data resource is updated, VarSome quickly makes it available for annotation and classification of your variants!

  • Network of Geneticists

    As VarSome Clinical has been deployed by dozens of institutional customers across many countries, you can benefit from VarSome's extensive network of molecular geneticists and health care professionals who contribute to the identification of likely causal variants, along with a summary of available therapeutic options.

Want to see VarSome Clinical in action?

Ask for a FREE 30-day trial!

More than 2'000 organizations and a growing community of 300'000 on the VarSome suite!

Member of Global Alliance